Since you can't boot into Windows, can you put the SSD in a different computer and see if it's GPT or MBR?Just followed the guide here on how to get around "access denied" when I try /fixboot and failed horribly. Wasn't sure which to do so I did the little empty one first which failed then I tried the next with a different letter and failed. Decided to hook the HDD up and just boot into windows but not only won't it boot with the HDD connected it won't even boot to the USB with it hooked up.
Getting ready to panic and do a reinstall saving data, I'm just out of ideas.
As long as the Windows partition is intact and the disk is GPT this should be fixable, but I understand just backing up data and reinstalling Windows. That will definitely work.