My worry is fragmentation of data across the HDD.
I'm sure Sony will provide defrag tools and rename them something more "personal" to make it less PC-y. Something like "HDD medicine". Push the button and get an explanation of how this "magic thing" will make your PS3 a bit faster and generally "better"...
It depends on what filesystem is being used. Windows filesystems require defragging. Most Linux filesystems eg. Ext3, ReiserFS, XFS, JFS etc. never ever need defragging. The reasons are due to the difference between Windows and Linux/Unix design philosophies - Linux/Unix being derived from a high end multi-user server OS and Windows being derived from a low end single user desktop OS. With a server OS, you can't afford to keep taking it offline for 30 minutes at a time to defrag the HDD. It is all in the way files are distributed onto free space on the disk. Windows writes them in a continous block, whereas Linux scatters files over the whole disk.
http://www.salmar.com/pipermail/wftl-lug/2002-March/000603.html